Main / Strategy / Oases assembler
Name: Oases assembler
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De novo transcriptome assembler for short reads. Contribute to dzerbino/oases development by creating an account on GitHub. We present Oases, a de novo transcriptome assembler that combines these advances. Oases merges the use of multiple k-mers presented in INTRODUCTION - METHODS - RESULTS - DISCUSSION. One of the concerns of assembling de novo transcriptomes is determining the amount of read sequences required to ensure a comprehensive coverage of.
Trinity and Oases are two commonly used de novo transcriptome assemblers. The contig sets they produce are of good quality. Still, their. In fact, you can use it to run Oases / Velvet multiple times and combing the results (so you don't have to worry about finding the absolute best. Coverage cutoff. Just like Velvet, low coverage contigs are removed from the assembly. Be- cause genes span all the spectrum of.
Provides a de novo transcriptome assembler for short RNA-seq reads. Oases congregates unmapped RNA-seq reads into full length transcripts. It enables. oases. De novo transcriptome assembler for very short reads. Oases is a de novo transcriptome assembler designed to produce transcripts. Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina.